Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54153.1Hypothetical protein. (57 aa)    
Predicted Functional Partners:
AMY54154.1
Hypothetical protein.
       0.686
AMY54155.1
Hypothetical protein.
       0.686
AMY54156.1
Hypothetical protein.
       0.686
csoR_2
Copper-sensing transcriptional repressor CsoR.
       0.646
copZ
Copper chaperone CopZ.
       0.591
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.551
AMY54152.1
Hypothetical protein.
       0.551
yliI
Soluble aldose sugar dehydrogenase YliI.
       0.428
AMY54160.1
Hypothetical protein.
       0.428
kynB
Kynurenine formamidase.
       0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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