Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54169.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
       0.538
gpmB
Phosphoglycerate mutase GpmB.
       0.463
resA_2
Thiol-disulfide oxidoreductase ResA.
       0.463
AMY54173.1
Hypothetical protein.
       0.463
ccsB
Cytochrome c biogenesis protein CcsB.
       0.463
ccsA_1
Cytochrome c biogenesis protein CcsA.
       0.463
AMY51724.1
Putative zinc-binding alcohol dehydrogenase.
 
     0.453
AMY55465.1
Hypothetical protein.
 
     0.448
AMY53460.1
Putative zinc-binding alcohol dehydrogenase.
 
     0.432
AMY54051.1
Hypothetical protein.
 
     0.421
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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