Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gpmBPhosphoglycerate mutase GpmB. (220 aa)    
Predicted Functional Partners:
resA_2
Thiol-disulfide oxidoreductase ResA.
  
 
 0.993
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.958
ccsB
Cytochrome c biogenesis protein CcsB.
 
    0.935
AMY54173.1
Hypothetical protein.
  
    0.923
ccsA_1
Cytochrome c biogenesis protein CcsA.
  
    0.919
AMY55778.1
Hypothetical protein.
  
     0.741
AMY55271.1
Hypothetical protein.
 
     0.735
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.734
AMY55083.1
Hypothetical protein.
 
     0.732
AMY52142.1
Hypothetical protein.
 
     0.702
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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