Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AMY54173.1Hypothetical protein. (272 aa)    
Predicted Functional Partners:
resA_2
Thiol-disulfide oxidoreductase ResA.
 
  
 0.995
ccsA_1
Cytochrome c biogenesis protein CcsA.
 
  
 0.995
ccsB
Cytochrome c biogenesis protein CcsB.
 
  
 0.986
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.935
gpmB
Phosphoglycerate mutase GpmB.
  
    0.923
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.706
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.607
AMY52632.1
Hypothetical protein.
  
    0.600
ctaE
Putative cytochrome c oxidase subunit 3.
  
   
 0.575
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
   
 0.556
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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