Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccsBCytochrome c biogenesis protein CcsB. (539 aa)    
Predicted Functional Partners:
ccsA_1
Cytochrome c biogenesis protein CcsA.
 
  
 0.994
AMY54173.1
Hypothetical protein.
 
  
 0.986
resA_2
Thiol-disulfide oxidoreductase ResA.
 
  
 0.985
gpmB
Phosphoglycerate mutase GpmB.
 
    0.935
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.869
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
  
 0.812
cysG
Siroheme synthase.
 
    0.786
qcrA
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
  
    0.754
ctaF
Cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.751
qcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
  
   
 0.721
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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