Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54186.1Putative HTH-type transcriptional regulator. (166 aa)    
Predicted Functional Partners:
AMY54187.1
Hypothetical protein.
       0.574
trxB_3
Thioredoxin reductase.
       0.559
clpC1_3
ATP-dependent Clp protease ATP-binding subunit ClpC1.
  
  
 0.459
AMY54188.1
Hypothetical protein.
       0.446
AMY54184.1
Hypothetical protein.
       0.426
AMY54190.1
Hypothetical protein.
       0.407
pepN_2
Aminopeptidase N.
     
 0.403
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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