Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54229.1Hypothetical protein; Belongs to the UPF0336 family. (170 aa)    
Predicted Functional Partners:
AMY54230.1
Hypothetical protein.
 0.999
AMY52696.1
Hypothetical protein.
 
0.995
fabG1
3-oxoacyl-[acyl-carrier-protein] reductase FabG1.
 
 0.941
inhA_2
Enoyl-[acyl-carrier-protein] reductase [NADH].
 
 
 0.925
AMY55150.1
Hypothetical protein.
  
     0.675
rpmG2_2
50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.
       0.629
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.615
katA
Catalase; Belongs to the catalase family.
   
 0.615
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
 
     0.601
tap
Tripeptidyl aminopeptidase.
  
 
  0.597
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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