Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54230.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
AMY54229.1
Hypothetical protein; Belongs to the UPF0336 family.
 0.999
inhA_2
Enoyl-[acyl-carrier-protein] reductase [NADH].
 
 
 0.955
fabG1
3-oxoacyl-[acyl-carrier-protein] reductase FabG1.
 
 0.945
AMY52696.1
Hypothetical protein.
  
  
 
0.902
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
   
 0.649
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
  
 0.620
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.615
katA
Catalase; Belongs to the catalase family.
   
 0.615
rpmG2_2
50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.
       0.590
AMY55150.1
Hypothetical protein.
  
     0.590
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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