Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54364.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
cstA
Carbon starvation protein A.
       0.537
AMY55523.1
Hypothetical protein.
  
  
 0.515
AMY51522.1
Hypothetical protein.
  
 
 0.514
AMY51662.1
Hypothetical protein.
  
 
 0.514
AMY53977.1
Hypothetical protein.
  
 
 0.514
AMY53978.1
Hypothetical protein.
  
 
 0.514
AMY54308.1
Hypothetical protein.
  
 
 0.514
AMY55303.1
Hypothetical protein.
    
   0.441
todS
Sensor histidine kinase TodS.
  
 
 0.421
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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