Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54401.1Putative monoacyl phosphatidylinositol tetramannoside-binding protein LpqW. (598 aa)    
Predicted Functional Partners:
nikB_2
Nickel transport system permease protein NikB.
  
 
 0.922
typA
GTP-binding protein TypA/BipA.
  
    0.842
AMY54405.1
Hypothetical protein.
 
     0.823
mshB_2
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.
 
     0.818
AMY55365.1
Hypothetical protein.
 
     0.792
lpqB
Lipoprotein LpqB.
  
   
 0.786
AMY53346.1
Putative membrane protein.
  
    0.777
hdl
(S)-2-haloacid dehalogenase 4A.
  
    0.775
AMY56159.1
Hypothetical protein.
  
     0.771
AMY51564.1
Hypothetical protein.
  
     0.770
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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