Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdxAFerredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)    
Predicted Functional Partners:
dapL
LL-diaminopimelate aminotransferase.
    
 0.951
icd
Isocitrate dehydrogenase [NADP]; Belongs to the monomeric-type IDH family.
  
  
 0.766
AMY54410.1
Hypothetical protein.
       0.745
fbiC
FO synthase.
       0.717
fprA
NADPH-ferredoxin reductase FprA.
 
 
 0.705
dus
Putative tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
   
  
 0.618
desA1_1
Putative acyl-[acyl-carrier-protein] desaturase desA1.
   
  
 0.576
desA1_2
Putative acyl-[acyl-carrier-protein] desaturase desA1.
   
  
 0.576
desA1_3
Putative acyl-[acyl-carrier-protein] desaturase desA1.
   
  
 0.576
desA1_4
Putative acyl-[acyl-carrier-protein] desaturase desA1.
   
  
 0.576
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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