Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vgb_2Virginiamycin B lyase. (306 aa)    
Predicted Functional Partners:
dapE_2
Putative succinyl-diaminopimelate desuccinylase DapE.
  
    0.811
yvdD_1
LOG family protein YvdD; Belongs to the LOG family.
       0.760
yvdD_2
LOG family protein YvdD; Belongs to the LOG family.
       0.760
papA2
Trehalose-2-sulfate acyltransferase papA2.
  
 
   0.751
AMY54978.1
Hypothetical protein.
  
     0.719
AMY52261.1
Glucan endo-1,3-beta-glucosidase.
  
   
 0.718
AMY54976.1
Hypothetical protein.
 
     0.716
AMY52357.1
Hypothetical protein.
  
    0.678
AMY53432.1
Hypothetical protein.
  
    0.674
abfB
Extracellular exo-alpha-L-arabinofuranosidase.
  
   
 0.608
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.