Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54433.1Long-chain-fatty-acid--CoA ligase FadD17. (591 aa)    
Predicted Functional Partners:
mas
Mycocerosic acid synthase.
  
 0.898
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 0.836
bcd_2
Acyl-CoA dehydrogenase, short-chain specific.
 
 
 0.662
yvdD_2
LOG family protein YvdD; Belongs to the LOG family.
  
    0.653
yvdD_1
LOG family protein YvdD; Belongs to the LOG family.
       0.646
dapE_2
Putative succinyl-diaminopimelate desuccinylase DapE.
  
    0.626
acdA_7
Acyl-CoA dehydrogenase.
 
 
 0.620
mmgC_4
Acyl-CoA dehydrogenase.
 
 
 0.592
lgrD_3
Linear gramicidin synthase subunit D.
  
 0.587
vgb_2
Virginiamycin B lyase.
   
   0.576
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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