Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glnPGlutamine transport system permease protein GlnP. (485 aa)    
Predicted Functional Partners:
artM
Arginine transport ATP-binding protein ArtM.
 0.997
tcyC_2
L-cystine import ATP-binding protein TcyC.
 
 0.941
tcyC_1
L-cystine import ATP-binding protein TcyC.
 
 0.940
glnQ_1
Glutamine transport ATP-binding protein GlnQ.
 
 0.938
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
 
 0.938
glnQ_2
Glutamine transport ATP-binding protein GlnQ.
 
 0.937
glnH_1
ABC transporter glutamine-binding protein GlnH.
 
 
 0.776
tcyB
L-cystine transport system permease protein TcyB.
 
0.753
artJ_1
ABC transporter arginine-binding protein 1.
 
 
 0.716
gltB_1
Glutamate synthase [NADPH] large chain.
  
  
 0.649
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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