Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54455.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
rsbW_2
Serine-protein kinase RsbW.
 
  
 0.837
mcl1_1
L-malyl-CoA/beta-methylmalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
    0.836
AMY54473.1
Hypothetical protein.
 
    0.796
poxB
Pyruvate dehydrogenase; Belongs to the TPP enzyme family.
  
    0.775
opuCC
Glycine betaine/carnitine/choline-binding protein OpuCC.
  
    0.767
AMY54452.1
Hypothetical protein.
 
     0.761
AMY54453.1
Magnesium transporter MgtE.
       0.729
osmX
Osmoprotectant-binding protein OsmX.
  
    0.608
AMY54220.1
Hypothetical protein.
  
     0.606
lpqY
Trehalose-binding lipoprotein LpqY.
       0.561
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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