Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phnPPPhosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase. (305 aa)    
Predicted Functional Partners:
AMY54467.1
Hypothetical protein.
 
     0.905
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.902
AMY54466.1
Hypothetical protein.
       0.879
corA_2
Magnesium transport protein CorA.
  
    0.796
AMY54468.1
NAD-dependent malic enzyme.
  
    0.501
AMY56002.1
Hypothetical protein.
  
     0.497
AMY54227.1
Hypothetical protein; Belongs to the UPF0234 family.
 
   
 0.430
AMY54604.1
Putative threonylcarbamoyl-AMP synthase; Belongs to the SUA5 family.
  
    0.421
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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