Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opuCB_1Glycine betaine/carnitine/choline transport system permease protein OpuCB. (220 aa)    
Predicted Functional Partners:
opuBA
Choline transport ATP-binding protein OpuBA.
 
 0.998
opuCC
Glycine betaine/carnitine/choline-binding protein OpuCC.
 
 
 0.996
osmV
Osmoprotectant import ATP-binding protein OsmV.
 
 0.990
osmX
Osmoprotectant-binding protein OsmX.
 
 0.981
opuBB_1
Choline transport system permease protein OpuBB.
 
  
0.977
AMY54473.1
Hypothetical protein.
 
 
 0.971
lspA_1
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.428
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
      
 0.425
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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