Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54473.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
opuBA
Choline transport ATP-binding protein OpuBA.
 
 0.982
opuCB_1
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 
 
 0.971
opuCC
Glycine betaine/carnitine/choline-binding protein OpuCC.
 
  
 
0.969
opuBB_1
Choline transport system permease protein OpuBB.
 
 
 0.961
osmV
Osmoprotectant import ATP-binding protein OsmV.
  
 0.936
osmX
Osmoprotectant-binding protein OsmX.
     
  0.900
opuBB_2
Choline transport system permease protein OpuBB.
  
 
 0.890
opuCB_2
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
  
 
 0.885
AMY54455.1
Hypothetical protein.
 
    0.796
AMY55644.1
Hypothetical protein.
 
  
  0.443
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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