Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54480.1Hypothetical protein. (256 aa)    
Predicted Functional Partners:
natA_2
ABC transporter ATP-binding protein NatA.
 
     0.929
AMY54479.1
Putative multidrug export ATP-binding/permease protein.
  
 0.865
AMY54483.1
Hypothetical protein.
       0.677
AMY55299.1
Hypothetical protein.
 
 
 0.607
AMY53155.1
Hypothetical protein.
  
     0.550
AMY55368.1
Hypothetical protein.
 
 
 0.543
AMY54482.1
Hypothetical protein.
       0.542
AMY53761.1
Hypothetical protein.
 
 
 0.526
AMY55699.1
Hypothetical protein.
 
     0.519
AMY52854.1
Hypothetical protein.
  
 
 0.511
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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