AMY54494.1 protein (Rhodococcus fascians D188)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AMY54494.1

L-gulono-1,4-lactone dehydrogenase. (437 aa)

Predicted Functional Partners:

AMY54496.1

0.895

betI_8

0.835

yedY_4

0.671

plsB1

0.575

nuoF

0.543

ephD_6

0.495

AMY52090.1

0.491

etfA

0.478

etfB

0.476

atpH

0.449

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY52090.1	AMY54494.1	A3L23_00733	A3L23_03162	Hypothetical protein.	L-gulono-1,4-lactone dehydrogenase.	0.491
AMY54494.1	AMY52090.1	A3L23_03162	A3L23_00733	L-gulono-1,4-lactone dehydrogenase.	Hypothetical protein.	0.491
AMY54494.1	AMY54496.1	A3L23_03162	A3L23_03164	L-gulono-1,4-lactone dehydrogenase.	D-threonine aldolase.	0.895
AMY54494.1	atpH	A3L23_03162	A3L23_03282	L-gulono-1,4-lactone dehydrogenase.	ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.449
AMY54494.1	betI_8	A3L23_03162	A3L23_03163	L-gulono-1,4-lactone dehydrogenase.	HTH-type transcriptional regulator BetI.	0.835
AMY54494.1	ephD_6	A3L23_03162	A3L23_02443	L-gulono-1,4-lactone dehydrogenase.	Putative oxidoreductase EphD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.495
AMY54494.1	etfA	A3L23_03162	A3L23_04758	L-gulono-1,4-lactone dehydrogenase.	Electron transfer flavoprotein subunit alpha.	0.478
AMY54494.1	etfB	A3L23_03162	A3L23_04759	L-gulono-1,4-lactone dehydrogenase.	Electron transfer flavoprotein subunit beta.	0.476
AMY54494.1	nuoF	A3L23_03162	A3L23_04579	L-gulono-1,4-lactone dehydrogenase.	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.543
AMY54494.1	plsB1	A3L23_03162	A3L23_01537	L-gulono-1,4-lactone dehydrogenase.	Putative acyltransferase plsB1; Belongs to the GPAT/DAPAT family.	0.575
AMY54494.1	yedY_4	A3L23_03162	A3L23_03161	L-gulono-1,4-lactone dehydrogenase.	Sulfoxide reductase catalytic subunit YedY.	0.671
AMY54496.1	AMY54494.1	A3L23_03164	A3L23_03162	D-threonine aldolase.	L-gulono-1,4-lactone dehydrogenase.	0.895
AMY54496.1	betI_8	A3L23_03164	A3L23_03163	D-threonine aldolase.	HTH-type transcriptional regulator BetI.	0.842
atpH	AMY54494.1	A3L23_03282	A3L23_03162	ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	L-gulono-1,4-lactone dehydrogenase.	0.449
atpH	etfA	A3L23_03282	A3L23_04758	ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	Electron transfer flavoprotein subunit alpha.	0.477
atpH	nuoF	A3L23_03282	A3L23_04579	ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.874
betI_8	AMY54494.1	A3L23_03163	A3L23_03162	HTH-type transcriptional regulator BetI.	L-gulono-1,4-lactone dehydrogenase.	0.835
betI_8	AMY54496.1	A3L23_03163	A3L23_03164	HTH-type transcriptional regulator BetI.	D-threonine aldolase.	0.842
betI_8	yedY_4	A3L23_03163	A3L23_03161	HTH-type transcriptional regulator BetI.	Sulfoxide reductase catalytic subunit YedY.	0.453
ephD_6	AMY54494.1	A3L23_02443	A3L23_03162	Putative oxidoreductase EphD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	L-gulono-1,4-lactone dehydrogenase.	0.495