Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydfG_2NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (286 aa)    
Predicted Functional Partners:
AMY54519.1
Hypothetical protein.
       0.773
budC_2
Diacetyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.683
ephD_5
Putative oxidoreductase EphD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.673
bdcA
Cyclic-di-GMP-binding biofilm dispersal mediator protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.602
yfiY_7
Putative siderophore-binding lipoprotein YfiY.
       0.556
budC_3
Diacetyl reductase.
  
 
 0.538
AMY54518.1
Hypothetical protein.
       0.512
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 
 0.489
car
Carboxylic acid reductase.
  
 
 0.450
dnaJ1
Chaperone protein DnaJ 1; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
 
 
 
 0.431
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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