Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
pldPhospholipase D. (550 aa)    
Predicted Functional Partners:
folE
GTP cyclohydrolase 1.
    
 0.932
folB
Putative dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.929
phoD_1
Alkaline phosphatase D.
  
  
 
0.927
phoD_2
Alkaline phosphatase D.
  
  
 
0.922
glpE_2
Thiosulfate sulfurtransferase GlpE; Belongs to the UPF0176 family.
       0.752
rluA_3
Ribosomal large subunit pseudouridine synthase A.
       0.751
phrB
(6-4) photolyase.
       0.543
AMY54527.1
Hypothetical protein.
       0.495
AMY53127.1
Hypothetical protein.
 
  
 0.417
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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