Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
arpA_4A-factor receptor protein. (223 aa)    
Predicted Functional Partners:
AMY54529.1
Hypothetical protein.
       0.773
AMY54531.1
Hypothetical protein.
       0.746
kdpE_2
Transcriptional regulatory protein KdpE.
   
    0.604
AMY53581.1
Putative HTH-type transcriptional regulator.
   
    0.602
ideR_2
Iron-dependent repressor IdeR.
   
  
 0.602
AMY52094.1
Putative HTH-type transcriptional regulator.
   
  
 0.600
ywtF
Putative transcriptional regulator YwtF.
   
    0.600
sigJ_2
ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
   
    0.589
AMY53240.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   0.582
kstR
HTH-type transcriptional repressor KstR.
   
    0.574
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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