Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
recD_2RecBCD enzyme subunit RecD. (1644 aa)    
Predicted Functional Partners:
AMY53103.1
Hypothetical protein.
  
    0.780
smc_1
Chromosome partition protein Smc.
 
    0.727
AMY54745.1
Hypothetical protein.
 
    0.711
AMY52063.1
Hypothetical protein.
  
     0.647
AMY54746.1
Hypothetical protein.
 
  
 0.598
AMY54744.1
Hypothetical protein.
 
  
 0.597
AMY54533.1
Putative metallophosphoesterase.
       0.523
AMY52427.1
Hypothetical protein.
  
     0.513
AMY54204.1
Hypothetical protein.
  
     0.490
pcrA_2
ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
 
 
 0.490
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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