thiY_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

thiY_1

Formylaminopyrimidine-binding protein. (337 aa)

Predicted Functional Partners:

ssuC_3

0.988

cmpD_2

0.981

tenA

0.901

ssuC_7

0.869

ssuC_6

0.773

ssuC_5

0.712

ssuC_1

0.702

ssuC_4

0.673

ssuB_2

0.673

ssuC_2

0.662

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cmpD_2	ssuC_1	A3L23_03219	A3L23_00457	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.875
cmpD_2	ssuC_2	A3L23_03219	A3L23_00458	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.865
cmpD_2	ssuC_3	A3L23_03219	A3L23_03220	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.985
cmpD_2	ssuC_4	A3L23_03219	A3L23_03374	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.903
cmpD_2	ssuC_5	A3L23_03219	A3L23_03446	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.921
cmpD_2	ssuC_6	A3L23_03219	A3L23_03447	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.883
cmpD_2	ssuC_7	A3L23_03219	A3L23_03461	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.903
cmpD_2	tenA	A3L23_03219	A3L23_03222	Bicarbonate transport ATP-binding protein CmpD.	Aminopyrimidine aminohydrolase.	0.872
cmpD_2	thiY_1	A3L23_03219	A3L23_03221	Bicarbonate transport ATP-binding protein CmpD.	Formylaminopyrimidine-binding protein.	0.981
ssuB_2	ssuC_1	A3L23_03459	A3L23_00457	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.875
ssuB_2	ssuC_2	A3L23_03459	A3L23_00458	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.864
ssuB_2	ssuC_3	A3L23_03459	A3L23_03220	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.860
ssuB_2	ssuC_4	A3L23_03459	A3L23_03374	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.927
ssuB_2	ssuC_5	A3L23_03459	A3L23_03446	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.919
ssuB_2	ssuC_6	A3L23_03459	A3L23_03447	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.876
ssuB_2	ssuC_7	A3L23_03459	A3L23_03461	Aliphatic sulfonates import ATP-binding protein SsuB.	Putative aliphatic sulfonates transport permease protein SsuC.	0.963
ssuB_2	thiY_1	A3L23_03459	A3L23_03221	Aliphatic sulfonates import ATP-binding protein SsuB.	Formylaminopyrimidine-binding protein.	0.673
ssuC_1	cmpD_2	A3L23_00457	A3L23_03219	Putative aliphatic sulfonates transport permease protein SsuC.	Bicarbonate transport ATP-binding protein CmpD.	0.875
ssuC_1	ssuB_2	A3L23_00457	A3L23_03459	Putative aliphatic sulfonates transport permease protein SsuC.	Aliphatic sulfonates import ATP-binding protein SsuB.	0.875
ssuC_1	ssuC_2	A3L23_00457	A3L23_00458	Putative aliphatic sulfonates transport permease protein SsuC.	Putative aliphatic sulfonates transport permease protein SsuC.	0.846