Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54578.1Hypothetical protein. (238 aa)    
Predicted Functional Partners:
AMY54577.1
Shikimate 5-dehydrogenase-like protein.
  
    0.683
AMY54579.1
Zinc-type alcohol dehydrogenase-like protein.
   
 
 0.629
ribD_1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.485
AMY52742.1
Hypothetical protein.
  
  
 0.464
AMY55271.1
Hypothetical protein.
 
     0.464
rapA_1
RNA polymerase-associated protein RapA.
   
   0.462
cshA_1
ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
    
 0.458
rhlE_1
ATP-dependent RNA helicase RhlE.
    
 0.458
deaD_2
ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
    
 0.458
rhlE_3
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 0.458
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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