Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY54579.1Zinc-type alcohol dehydrogenase-like protein. (299 aa)    
Predicted Functional Partners:
AMY54581.1
Hypothetical protein.
       0.689
rapA_1
RNA polymerase-associated protein RapA.
   
 
 0.635
AMY54578.1
Hypothetical protein.
   
 
 0.629
yfmJ_3
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.542
bauC_1
Putative 3-oxopropanoate dehydrogenase.
  
 
 0.522
yfmJ_1
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.513
crt_4
Short-chain-enoyl-CoA hydratase.
  
 
 0.508
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.508
mmgC_6
Acyl-CoA dehydrogenase.
  
 
 0.499
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 
 0.496
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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