Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54581.1Hypothetical protein. (250 aa)    
Predicted Functional Partners:
rapA_1
RNA polymerase-associated protein RapA.
    0.993
rapA_3
RNA polymerase-associated protein RapA.
    0.969
AMY54579.1
Zinc-type alcohol dehydrogenase-like protein.
       0.689
bauC_1
Putative 3-oxopropanoate dehydrogenase.
       0.687
crt_4
Short-chain-enoyl-CoA hydratase.
       0.678
mmsB
Putative 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
       0.677
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.667
mmgC_6
Acyl-CoA dehydrogenase.
       0.658
rapA_2
RNA polymerase-associated protein RapA.
    0.639
AMY54578.1
Hypothetical protein.
       0.437
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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