Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54602.1Hypothetical protein. (270 aa)    
Predicted Functional Partners:
AMY55702.1
Hypothetical protein.
 
     0.729
prmC_1
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.662
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.551
eccD5
ESX-5 secretion system protein eccD5.
  
    0.527
tgpA
Protein-glutamine gamma-glutamyltransferase.
  
     0.522
AMY52870.1
Hypothetical protein.
  
     0.513
AMY54604.1
Putative threonylcarbamoyl-AMP synthase; Belongs to the SUA5 family.
       0.497
AMY55701.1
Hypothetical protein.
 
     0.497
wecA
Decaprenyl-phosphate N-acetylglucosaminephosphotransferase.
       0.466
AMY55586.1
Hypothetical protein.
 
 
 0.445
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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