Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rbsR_3Ribose operon repressor. (345 aa)    
Predicted Functional Partners:
ccpA_2
Catabolite control protein A.
  
     0.773
gltB_1
Glutamate synthase [NADPH] large chain.
    
 
 0.736
gltB_2
Glutamate synthase [NADPH] large chain.
    
 
 0.736
malL
Oligo-1,6-glucosidase.
  
  
 0.659
araA_1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.641
nagA
N-acetylglucosamine-6-phosphate deacetylase.
     
 0.639
bcp_1
Putative peroxiredoxin bcp.
      
 0.623
amiF
Formamidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
       0.546
ptsH
Phosphocarrier protein HPr.
   
 
 0.471
fruA
PTS system fructose-specific EIIABC component.
     
 0.466
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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