Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54635.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
xlnD
3-hydroxybenzoate 6-hydroxylase 1.
 
  
 0.824
nicX
2,5-dihydroxypyridine 5,6-dioxygenase.
       0.781
naiP
Putative niacin/nicotinamide transporter NaiP.
       0.777
kdhA_1
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
       0.777
ramA_3
(R)-stereoselective amidase.
     
 0.776
AMY54643.1
Hypothetical protein.
       0.776
cdhA_1
Caffeine dehydrogenase subunit alpha.
  
    0.773
cdhC_1
Caffeine dehydrogenase subunit gamma.
       0.773
pucA_1
Putative xanthine dehydrogenase subunit A.
       0.773
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.522
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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