Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
cdhA_1Caffeine dehydrogenase subunit alpha. (788 aa)    
Predicted Functional Partners:
cdhC_1
Caffeine dehydrogenase subunit gamma.
 
 0.994
kdhA_1
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
 
 0.981
cdhC_2
Caffeine dehydrogenase subunit gamma.
 
 0.957
yagT
Putative xanthine dehydrogenase YagT iron-sulfur-binding subunit.
 
 0.956
pucA_1
Putative xanthine dehydrogenase subunit A.
 
  
 0.955
AMY54643.1
Hypothetical protein.
 
  
 0.932
kdhA_2
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
 
 0.924
hcrB
4-hydroxybenzoyl-CoA reductase subunit beta.
 
 
 0.832
nicX
2,5-dihydroxypyridine 5,6-dioxygenase.
 
   
 0.813
pucA_2
Putative xanthine dehydrogenase subunit A.
 
  
 0.812
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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