Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54662.1Hypothetical protein. (422 aa)    
Predicted Functional Partners:
AMY54034.1
Hypothetical protein.
 
   0.511
AMY54661.1
Hypothetical protein.
       0.481
tolB
Protein TolB.
  
 
 0.474
AMY55523.1
Hypothetical protein.
   
 
 0.439
AMY54168.1
Hypothetical protein.
 
 
 0.438
AMY54310.1
Hypothetical protein.
   
  
 0.433
AMY55465.1
Hypothetical protein.
  
 
 0.416
AMY53059.1
Hypothetical protein.
  
 
 0.406
AMY52475.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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