Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sad_3Succinate semialdehyde dehydrogenase [NAD(P)+] Sad. (162 aa)    
Predicted Functional Partners:
gabD1
Succinate-semialdehyde dehydrogenase [NADP(+)] 1.
     0.994
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
  
 0.620
ytpA_2
Phospholipase YtpA.
   
 
 0.530
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.527
acnA
Aconitate hydratase.
  
 0.515
fadB_3
Fatty acid oxidation complex subunit alpha.
   
 0.504
fadJ
Fatty acid oxidation complex subunit alpha.
   
 0.504
fadB_5
Fatty acid oxidation complex subunit alpha.
   
 0.504
icd
Isocitrate dehydrogenase [NADP]; Belongs to the monomeric-type IDH family.
     
 0.468
AMY55523.1
Hypothetical protein.
  
 0.450
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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