Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
gltC_5HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family. (318 aa)    
Predicted Functional Partners:
cmpR
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.737
AMY54680.1
Hypothetical protein.
 
     0.651
citN_2
Citrate transporter.
 
  
 0.637
AMY54679.1
Hypothetical protein.
       0.621
cynR_3
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.609
AMY54682.1
Hypothetical protein.
   
 
 0.520
cocE
Cocaine esterase.
       0.481
AMY55109.1
PhoH-like protein.
 
   
 0.437
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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