Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54679.1Hypothetical protein. (450 aa)    
Predicted Functional Partners:
AMY54680.1
Hypothetical protein.
 
     0.959
citN_2
Citrate transporter.
 
     0.937
cocE
Cocaine esterase.
 
     0.713
accC_3
Biotin carboxylase.
  
  
 0.673
hmgA
Homogentisate 1,2-dioxygenase.
  
 
 0.664
citN_1
Citrate transporter.
 
     0.628
gltC_5
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
       0.621
AMY53502.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
  
 0.443
accD5_4
Putative propionyl-CoA carboxylase beta chain 5.
  
  
 0.443
AMY54781.1
Hypothetical protein.
 
    0.430
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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