Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54684.1Hypothetical protein. (984 aa)    
Predicted Functional Partners:
mutL
DNA mismatch repair protein MutL.
 
   
 0.951
AMY54682.1
Hypothetical protein.
 
     0.925
soj_3
Sporulation initiation inhibitor protein Soj.
 
     0.846
AMY54741.1
Hypothetical protein.
 
  
 0.813
AMY54740.1
Hypothetical protein.
 
   
 0.795
glsA1_2
Glutaminase 1; Belongs to the glutaminase family.
   
 0.788
AMY54686.1
Hypothetical protein.
       0.781
kinE
Sporulation kinase E.
   
 0.761
ybjG
Putative undecaprenyl-diphosphatase YbjG.
    
 0.751
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 0.709
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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