Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bluB_25,6-dimethylbenzimidazole synthase. (224 aa)    
Predicted Functional Partners:
pip_1
Proline iminopeptidase; Belongs to the peptidase S33 family.
  
    0.779
AMY54691.1
Hypothetical protein.
       0.749
AMY54690.1
Hypothetical protein.
       0.541
AMY53642.1
Hypothetical protein.
  
  
 0.510
AMY54482.1
Hypothetical protein.
 
  
 0.489
AMY55123.1
Hypothetical protein.
 
  
 0.476
AMY55528.1
Hypothetical protein.
 
    0.453
AMY54208.1
Hypothetical protein.
 
    0.440
AMY54184.1
Hypothetical protein.
  
     0.420
AMY53138.1
Hypothetical protein.
  
    0.413
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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