Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
npcCHydroxyquinol 1,2-dioxygenase. (299 aa)    
Predicted Functional Partners:
tfdF
Maleylacetate reductase.
 
 0.997
clcD
Carboxymethylenebutenolidase.
   
 
 0.905
AMY53442.1
Hypothetical protein.
   
 
 0.905
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.901
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.865
catC
Muconolactone Delta-isomerase.
 
  
 0.860
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.805
xlnD
3-hydroxybenzoate 6-hydroxylase 1.
 
  
 0.717
tfdB
2,4-dichlorophenol 6-monooxygenase.
 
  
 0.709
pcaR
Pca regulon regulatory protein.
  
   
 0.691
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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