Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cpnACyclopentanol dehydrogenase. (256 aa)    
Predicted Functional Partners:
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.737
isfD_2
Sulfoacetaldehyde reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.727
bdcA
Cyclic-di-GMP-binding biofilm dispersal mediator protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.722
gutB_4
Sorbitol dehydrogenase.
  
  
 0.671
AMY52249.1
Putative O-methyltransferase.
  
 
 0.659
rbsA_5
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
       0.560
ytfQ_2
ABC transporter periplasmic-binding protein YtfQ.
       0.469
dhbF_1
Dimodular nonribosomal peptide synthase.
  
 
 0.454
tycC_1
Tyrocidine synthase 3.
  
 
 0.454
tycC_3
Tyrocidine synthase 3.
  
 
 0.454
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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