Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
estB_5Esterase EstB. (377 aa)    
Predicted Functional Partners:
kstR2_7
HTH-type transcriptional repressor KstR2.
       0.783
lcfB_8
Long-chain-fatty-acid--CoA ligase.
       0.781
fbiB_2
Coenzyme F420:L-glutamate ligase.
     
 0.705
hapE_2
4-hydroxyacetophenone monooxygenase.
 
     0.535
AMY53492.1
Hypothetical protein.
  
     0.482
AMY53055.1
Hypothetical protein.
  
  
 0.462
AMY53291.1
D-alanyl-D-alanine carboxypeptidase.
  
     0.455
ethA_1
FAD-containing monooxygenase EthA.
  
     0.425
ethA_2
FAD-containing monooxygenase EthA.
  
     0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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