Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbiB_2Coenzyme F420:L-glutamate ligase. (220 aa)    
Predicted Functional Partners:
lcfB_8
Long-chain-fatty-acid--CoA ligase.
   
   0.784
estB_5
Esterase EstB.
     
 0.705
kstR2_7
HTH-type transcriptional repressor KstR2.
       0.702
hapE_2
4-hydroxyacetophenone monooxygenase.
  
    0.536
AMY53642.1
Hypothetical protein.
  
  
 0.510
AMY54208.1
Hypothetical protein.
 
    0.450
fosB2
Metallothiol transferase FosB 2.
 
    0.448
AMY53211.1
Hypothetical protein.
  
    0.435
AMY55528.1
Hypothetical protein.
 
    0.427
AMY52357.1
Hypothetical protein.
 
  
 0.405
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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