Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stkPSerine/threonine-protein kinase StkP. (1394 aa)    
Predicted Functional Partners:
AMY54748.1
Hypothetical protein.
 
   
 0.955
AMY54749.1
Hypothetical protein.
 
     0.953
AMY54745.1
Hypothetical protein.
 
   
 0.952
smc_1
Chromosome partition protein Smc.
 
   
 0.952
AMY54744.1
Hypothetical protein.
 
   
 0.951
AMY54746.1
Hypothetical protein.
 
   
 0.951
rhpA
DEAD-box ATP-dependent RNA helicase RhpA.
 
     0.948
pstP
PP2C-family Ser/Thr phosphatase.
 
 
 0.534
pknL_1
Serine/threonine-protein kinase PknL.
 
 
 0.501
garA
Glycogen accumulation regulator GarA.
 
 
 
 0.500
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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