Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rhpADEAD-box ATP-dependent RNA helicase RhpA. (689 aa)    
Predicted Functional Partners:
AMY54748.1
Hypothetical protein.
 
     0.950
AMY54749.1
Hypothetical protein.
 
     0.950
AMY54745.1
Hypothetical protein.
 
     0.949
smc_1
Chromosome partition protein Smc.
 
     0.949
stkP
Serine/threonine-protein kinase StkP.
 
     0.948
AMY54744.1
Hypothetical protein.
 
     0.948
AMY54746.1
Hypothetical protein.
 
     0.948
nei1_1
Endonuclease 8 1.
  
  
 0.657
nei1_2
Endonuclease 8 1.
  
  
 0.657
radA
Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
   
    0.598
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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