Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AMY54774.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
ssuC_6
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.885
ssuC_5
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.882
tauB
Taurine import ATP-binding protein TauB.
 
 
 0.880
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.741
fkbP_1
FK506-binding protein.
   
    0.741
ssuB_2
Aliphatic sulfonates import ATP-binding protein SsuB.
 
 
 0.671
cmpD_1
Bicarbonate transport ATP-binding protein CmpD.
 
 
 0.660
ssuC_7
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.651
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.646
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
  
 
 0.609
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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