Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
apc4_1Acetophenone carboxylase delta subunit. (605 aa)    
Predicted Functional Partners:
apc3_1
Acetophenone carboxylase gamma subunit.
 0.999
apc3_2
Acetophenone carboxylase gamma subunit.
 0.999
apc4_2
Acetophenone carboxylase delta subunit.
 
0.971
tadA_2
tRNA-specific adenosine deaminase.
     
  0.900
gatA_3
Glutamyl-tRNA(Gln) amidotransferase subunit A.
       0.773
kipA_1
KipI antagonist.
     
 0.548
AMY54774.1
Hypothetical protein.
 
     0.521
lutR_5
HTH-type transcriptional regulator LutR.
 
     0.504
AMY54781.1
Hypothetical protein.
 
     0.450
mch
Mesaconyl-CoA hydratase.
 
     0.444
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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