Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lutR_5HTH-type transcriptional regulator LutR. (244 aa)    
Predicted Functional Partners:
rspR_4
HTH-type transcriptional repressor RspR.
 
  
 0.759
gntR_2
Putative D-xylose utilization operon transcriptional repressor.
 
  
 0.725
rspR_5
HTH-type transcriptional repressor RspR.
 
  
 0.708
rspR_9
HTH-type transcriptional repressor RspR.
 
  
 0.702
gntR_1
Putative D-xylose utilization operon transcriptional repressor.
 
  
 0.688
rspR_8
HTH-type transcriptional repressor RspR.
 
  
 0.661
rspR_2
HTH-type transcriptional repressor RspR.
 
  
 0.650
rspR_3
HTH-type transcriptional repressor RspR.
 
  
 0.641
mce2R
HTH-type transcriptional regulator Mce2R.
 
  
 0.631
AMY54781.1
Hypothetical protein.
 
     0.631
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.