Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY54781.1Hypothetical protein. (456 aa)    
Predicted Functional Partners:
gltA2
Citrate synthase 1; Belongs to the citrate synthase family.
  
  
 0.922
dml
2,3-dimethylmalate lyase.
 
  
 0.916
mcl1_2
L-malyl-CoA/beta-methylmalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.882
mch
Mesaconyl-CoA hydratase.
 
     0.875
uctC_3
Acetyl-CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family.
  
    0.818
prpB
Methylisocitrate lyase.
 
  
 0.808
citA
Putative citrate synthase 2; Belongs to the citrate synthase family.
  
  
 0.800
mmgC_7
Acyl-CoA dehydrogenase.
  
  
 0.755
AMY54080.1
Putative HTH-type transcriptional regulator.
  
  
 0.637
lutR_5
HTH-type transcriptional regulator LutR.
 
     0.631
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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