Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xdhD-xylose dehydrogenase. (385 aa)    
Predicted Functional Partners:
AMY54790.1
Hypothetical protein.
 
  
 0.966
AMY54789.1
Hypothetical protein.
 
   
 0.959
garK_2
Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family.
       0.773
cytR
HTH-type transcriptional repressor CytR.
 
   
 0.648
lysX
Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.604
lysS1
Lysine--tRNA ligase 1; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.596
AMY55725.1
Hypothetical protein.
 
  
 0.495
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.493
AMY52801.1
Hypothetical protein.
  
 
   0.479
pobA
P-hydroxybenzoate hydroxylase.
  
  
 0.445
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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