Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54806.1Hypothetical protein. (220 aa)    
Predicted Functional Partners:
kdhA_2
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
  
 0.962
cdhA_2
Caffeine dehydrogenase subunit alpha.
 
  
 0.951
apc4_2
Acetophenone carboxylase delta subunit.
 
     0.848
cdhC_2
Caffeine dehydrogenase subunit gamma.
 
   
 0.847
pucR_3
Purine catabolism regulatory protein.
 
     0.833
bar
Barbiturase; Responsible for the hydrolysis of barbituric acid (2,4,6- trihydroxy-1,3-pyrimidine), an intermediate in the oxidative catabolism of pyrimidines. Catalyzes the hydrolytic opening of the pyrimidine ring of barbituric acid to yield ureidomalonic acid; Belongs to the cyclic amide hydrolase (CyAH) family.
 
     0.798
apc3_2
Acetophenone carboxylase gamma subunit.
 
     0.783
pucR_4
Purine catabolism regulatory protein.
 
     0.770
rutG_1
Putative pyrimidine permease RutG.
 
     0.717
kdhA_1
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
  
 0.671
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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